Books

Clark, J.S. 2007. Models for Ecological Data. Princeton University Press. 

Clark, J.S. 2007. Ecological data models with R. Princeton University Press.

Clark. J.S. and A. E. Gelfand (eds). 2006. Hierarchical Modelling for the Environmental Sciences. Oxford University Press, Oxford, England.

Clark, J. S., B. J. Stocks, H. Cachier, and J. G. Goldammer (eds).  1997.  Sediment Records of Biomass Burning and Global Change. Springer Verlag, Berlin, Germany.

Papers in review

Clark, J.S., P. K. Agarwal, D. Bell, C. Ellis, P. Flikkema, A. Gelfand, G. Katul, K. Munagala, G. Puggioni, A. Silberstein, and J. Yang. Getting what we need from wireless sensor networks: a role for inferential ecosystem models.

Colchero, F., R. Medellin, J.S. Clark, R. Lee, and G. Katul. Drought and extraction forcing in a density dependent sheep population.

Dietze, M., M. Wolosin, and J. Clark.  Tree allometries: capturing diversity using a hierarchical Bayes approach.  in review.

Dietze, M. and J. Clark.  Rethinking gap dynamics: the impact of damaged trees and sprouts.  in review.

Dietze, M., S. Govindarajan, S. Chakraborthy, J. Clark, and P. Agarwal.  Are canopy gaps always bright: spatiotemporal variability in light limits the gap recruitment window.  in review.

Dietze, M. and J. Clark. 2006. The role of individual variability in the response of saplings to large forest gaps.  in review.

Govindarajan, S., S. Chakraborty, P. K. Agarwal,  M. C. Dietze, J. S. Clark, and Michael S. Wolosin. Light competition in forest canopies.

Gugger, P.F., J.S. Mclachlan, P.S. Manos, and J.S. Clark.  in review.  The genetic signal of postglacial migration in red maples (Acer rubrum L.) in the northeastern United States.

Ib‡–ez, I., Clark, J.S. and Dietze, M. Evaluating the sources of potential migrant species. Implications under climate change.

Ib‡–ez, I., Clark, J.S. and Dietze, M. Will potential migrant species be able to colonize already established communities? Estimating the performance of potential migrant species.

Wolosin, M., J. S. Clark, P. Agarwal, S. Chakraborty, M. Dietze, H. Schultz, D. Slaymaker, and M. Welch. Calibration with Ôground truthÓ or data/model assimilation? Application to canopy light availability.

Publications

1.     Clark, J.S., M. Dietze, P. Agarwal, S. Chakraborty, I. Ibanez, S. LaDeau, and M. Wolosin. 2007. Resolving the biodiversity debate. Ecology Letters, 10: 647–662. CR comment; CA reply.

2.     Cressie, N., C. A. Calder, J. S. Clark, J. M. Ver Hoef, and C. K. Wikle. 2007. Accounting for uncertainty in ecological analysis: the strengths and limitations of hierarchical statistical modeling. Ecological Applications, in press.

3.     Clark, J.S., M. Wolosin, M. Dietze, I. Ibanez, S. LaDeau, M. Welsh, and B. Kloeppel. 2007. Tree growth inference and prediction from diameter censuses and ring widths. Ecological Applications, in press.

4.     Ib‡–ez, I., J.S. Clark, S. LaDeau, and J. Hille Ris Lambers 2007. Exploiting temporal variability to understand tree recruitment response to climate change, Ecological Monographs, 77:163-177.

5.     Govindarajan, S. M. Dietze, P. Agarwal, and J.S. Clark. 2007. A scalable algorithm for dispersing populations. Journal of Intelligent Information Systems, DOI 10.1007/s10844-006-0030-z.

6.     Flikkema, P.G., P.J. K. Agarwal, J. S. Clark, C. Ellis, A. Gelfand, K. Munagala, and J. Yang. 2007. From data reverence to data relevance:  Model-mediated wireless sensing of the physical environment. Pages 988–994 in Y. Shi et al. (Eds.): ICCS 2007, Part I, LNCS 4487.

7.     Mohan, J.E., J. S. Clark, and W. H. Schlesinger. 2007. Long-term CO2 enrichment of an intact forest ecosystem: implications for temperate forest regeneration and succession.  Ecological Applications, 17:1198-1212.

8.     Flikkema, P.G., P.K. Agarwal, J.S. Clark, C. Ellis, A. Gelfand, K. Munagala, and J. Yang.  2006. Model-driven dynamic control of embedded wireless sensor networks.  Proc. 6th International Conference on Computational Science, Workshop on Dynamic Data Driven Application Systems, Reading, UK.

9.     Clark, J.S. and A. E. Gelfand. 2006. A future for models and data in ecology. Trends in Ecology and Evolution, 21, 375-380.

10.  LaDeau, S.L. and J.S. Clark. 2006. Elevated CO2 and tree fecundity: the role of tree size, interannual variability, and population heterogeneity.  Global Change Biology, 12:822-833.

11.  Mohan, J. E., L. H. Ziska, R. B. Thomas, R. C. Sicher, K. George, J. S. Clark, W. H. Schlesinger. 2006.  Biomass and toxicity responses of poison ivy (Toxicodendron radicans) to elevated atmospheric CO2.  Proceedings of the National Academy of Sciences.  103 (24): 9086.

12.  Carlin, B., J.S. Clark, and A. Gelfand. 2006.  Elements of Bayesian Inference. Pages 3-24 in J.S. Clark and A. Gelfand (eds). Hierarchical Models of the Environment. Oxford University Press (in press).

13.  LaDeau, S. and J.S. Clark. 2006. Pollen production by Pinus taeda L.(Pinaceae) growing in elevated atmospheric CO2. Functional Ecology, 20:541-547.

14.  Ib‡–ez, I., J. S. Clark, M. C. Dietze, K. Feeley, M. Hersh, S. LaDeau, A. McBride, N. E. Welch, and M. S. Wolosin. 2006. Predicting biodiversity change: Outside the climate envelope, beyond the species-area curve.  Ecology, 87:1896-1906.

15.  Clark, J.S. and S.L. LaDeau. 2006. Synthesizing ecological experiments and observational data with Hierarchical Bayes. Pages 41 – 58 in J.S. Clark and A. Gelfand (eds). Hierarchical Models of the Environment. Oxford University Press.

16.  Lewis, M.A., Neubert, M.G., Caswell, H., Clark, J.S., and  Shea, K. 2006. A guide to calculating discrete-time invasion rates from data.  Pages 169-192 in M. W. Cadotte, S. M. McMahon and T. Fukami (eds) Conceptual ecology and invasions biology: Reciprocal approaches to nature. Springer, Dordrecht, The Netherlands.

17.  Clark, J.S. 2005. Why environmental scientists are becoming Bayesians.  Ecology Letters 8:2-14.

18.  Brown K.J., Clark J.S. Grimm E.C., Donovan J.J., and Mueller PG. 2005. Fire cycles in North American interior grasslands and their relation to prairie droughts.  Proceedings of the National Academy of Sciences, 102: 8865-8870.

19.  Beckage, B., M. Lavine, and J.S. Clark. 2005. Estimating variability in seedling survival from count data. Journal of Ecology, 93: 1177-1184.

20.  Clark, J.S., G. Ferraz, N. Oguge, H. Hays, and J. DiCostanzo. 2005. Hierarchical Bayes for structured and variable populations: from capture-recapture data to life-history prediction.  Ecology 86:2232-2244. Appendix.

21.  HilleRisLambers, J. and J.S. Clark. 2005. The benefits of seed banking for Acer rubrum: maximizing seedling recruitment.  Canadian Journal of Forest Research 35: 806-813.

22.  Beckage, B. and J.S. Clark. 2005. Do seed and seedling predation contribute to the coexistence of three co-occuring tree species? Oecologia, 143:458-469.

23.  McLachlan, J.S., J.S. Clark, and P.S. Manos. 2005. Molecular indicators of tree migration capacity under rapid climate change.  Ecology,86:2088-2098.

24.  Hille Ris Lambers, J., J.S. Clark., and M. Lavine. 2005. Seed banking in temperate forests: Implications for recruitment limitation. Ecology, 86:85-95.

25.  Govindarajan, S., M. Dietze, P. Agarwal, and J.S. Clark. 2004. A scalable model of forest dynamics. Proceedings of the 20th Symposium on Computational Geometry SCG, 106-115.

26.  McLachlan, J.S. and J.S. Clark. 2004. Reconstructing historical ranges with fossil data at continental scales.  Forest Ecology and Management, 197:139-147.

27.  Wyckoff, P. and J.S. Clark. 2005. Comparing predictors of tree growth: the case for exposed canopy area.  Canadian Journal of Forest Research 35:13-20.

28.  Clark, J.S. and O. Bjornstad. 2004. Population time series: Process variability, observation errors, missing values, lags, and hidden states. Ecology, 85:3140-3150. Appendix.

29.  Clark, J.S., S. LaDeau, and I. Ibanez. 2004. Fecundity of trees and the colonization-competition hypothesis, Ecological Monographs, 74:415-442. Appendix.

30.  Clark, J.S. and J.S. McLachlan.  2004. Neutral theory (communication arising): The stability of forest biodiversity. Nature 427, 696 – 697.

31.  Mohan, J. E., J.S. Clark, and W. H. Schlesinger. 2004 Genetic variation in germination, growth, and survivorship of red maple in response to subambient through elevated atmospheric CO2.  Global Change Biology 10, 233-247

32.  Lynch, J.A., J.S. Clark, and B. J. Stocks.  2004. Charcoal production, dispersal and deposition from the Fort Providence Experimental Fire: Interpreting fire regimes from charcoal records in boreal forests.  Canadian Journal of Forest Research, 34: 1642–1656.

33.  Clark, J.S. 2004. ReidŐs Paradox: Tree migration capacity and rapid climate change. In T. Lovejoy (ed) Conservation and Global Change. Yale University Press.

34.  Clark, J.S. and J.S. McLachlan.  2003. Stability of forest diversity.  Nature, 423: 635-638.

35.  Higgins, S.I., J. S. Clark, R. Nathan, T. Hovestadt, F. Schurr,  J. M. V. Fragoso, M. R. Aguiar, E. Ribbens, and S. Lavorel. 2003.  Forecasting plant migration rates: managing uncertainty for risk assessment. Journal of Ecology, 91:341-347.

36.  Hille Ris Lambers, J. and J.S. Clark. 2003. Effects of dispersal, shrubs, and density-dependent mortality on seed and seedling distributions in temperate forests. Canadian Journal of Forest Research 33: 783-795.

37.  Beckage, B. and J.S. Clark. 2003. Seedling survival and growth in Southern Appalachian forests: Does spatial heterogeneity maintain species diversity? Ecology 84:1849-1861.

38.  Clark, J.S., M. Lewis, J.S. McLachlan, J. Hille Ris Lambers. 2003. Estimating population spread: what can we forecast and how well? Ecology 84:1979-1988.

39.  Calder, K. M. Lavine, P. Mueller, and J.S. Clark. 2003. Incorporating multiple sources of stochasticity in population dynamic models. Ecology 84:1395-1402.

40.  Clark, J.S. 2003. Uncertainty in ecological inference and forecasting. (Special Feature). Ecology 84:1349-1350.

41.  Clark, J.S. 2003.  Uncertainty in population growth rates calculated from demography: the hierarchical approach.   Ecology 84:1370-1381.

42.  Lynch, J.A., B. Bigelow, J.S. Clark, M. Edwards, and B. Finney.  2003. Spatial and temporal variation in boreal fire.  Journal of Geophysical Research, 108: 8152 (17 pp).

43.  Clark, J. S., J. Mohan, M. Dietze, and I. Ibanez. 2003. Coexistence: how to identify trophic tradeoffs. Ecology, 84:17-31.  Appendix.

44.  Hille Ris Lambers, J. S. Clark, and J., B. Beckage.  2002. Density dependent mortality and the latitudinal gradient in species diversity.  Nature, 417:732–735.

45.  Wyckoff, P.H. and J.S. Clark. 2002. Growth and mortality for seven co-occurring tree species in the southern Appalachian Mountains: implications for future forest composition.  Journal of Ecology, 90:604–615.

46.  Clark, J.S., E.C. Grimm, J. J. Donovan, S.C. Fritz, D.R. Engstrom, and J.E. Almendinger. 2002. Drought cycles and landscape responses to past aridity on prairies of the Northern Great Plains, USA.  Ecology, 83:595-601.

47.  Clark, J.S., B. Beckage, J. HilleRisLambers, I. Ibanez, S. LaDeau,  J. MacLachlan, J. Mohan, and M. Rocca.  2002.  Dispersal and plant migration.  Pages 81-93 in H. Mooney and J. Canadell (eds) Encyclopedia of Global Environmental Change, Vol 3, Wiley, Chichester, England.

48.  Clark, J.S., A. M. Gill, and A. P. Kershaw. 2002. Spatial variability in fire regimes: its effects on recent and past vegetation,  Pages 125-144 in R. A. Bradstock, J.E. Williams, and A.M. Gill (eds) Flammable Australia: the Fire Regimes and Biodiversity of a Continent, Cambridge University Press, Cambridge, England.

49.  Kershaw, A.P., Clark, J.S., A. M. Gill, and D.M. DŐCosta. 2002. A history of fire in Australia, Pages 3-25 in R. Bradstock and A.M. Gill (eds) Flammable Australia: the Fire Regimes and Biodiversity of a Continent, Cambridge University Press, Cambridge, England.

50.  Lavine, M., B. Beckage, and J.S. Clark. 2002.  Statistical modeling of seedling mortality. Journal of Agricultural, Biological, and Environmental Statistics, 7: 21-41.

51.  Clark, J.S. S. R. Carpenter, M. Barber, S. Collins, A. Dobson, J. Foley, D. Lodge, M. Pascual, R. Pielke, Jr, W. Pizer, C. Pringle, W. V. Reid, K. A. Rose, O. Sala, W. H. Schlesinger, D. Wall, and D. Wear. 2001. Ecological forecasts: an emerging imperative. Science 293:657-660.

52.  Camill, P., J.A Lynch, J.S. Clark, J.B. Adams and B. Jordan. 2001.  Changes in biomass, aboveground NPP, and peat accumulation following permafrost thaw in the boreal peatlands of Manitoba, Canada. Ecosystems, 4:461-478.

53.  LaDeau, S. and J.S. Clark. 2001. Rising CO2 and the fecundity of forest trees, Science 292:95-98.

54.  Clark, J.S., Lewis, M., and L. Horvath. 2001.  Invasion by extremes: variation in dispersal and reproduction retards population spread.  American Naturalist 157:537-554.

55.    Clark, J.S., L. Horvath, and M. Lewis.  2001.  On the estimation of spread for a biological population.  Statistics and Probability Letters 51:225-234.

56.  Schlesinger, W.H., J.S. Clark, J. E. Mohan and C. D. Reid. 2001. Global environmental change: effects on biodiversity. 2001. Pages 175-224 in G. Orians and M. Soule.  Research Priorities for Conservation Biology, Island Press.

57.  Clark, J.S., E.C. Grimm, J. Lynch, and P.J. Mueller. 2001.  Effects of Holocene climate change on the C4 grassland/woodland boundary in the Northern Central Plains.  Ecology 82:620-636.

58.  Clark, J.S. and M. Lavine.  2001. Bayesian statistics in ecology.  Pages 327 – 346 in S.M. Scheiner and J. Gurevitch (eds) Design and Analysis of Ecological Experiments Oxford Univ Press, Oxford, England.

59.  Beckage, B., J.S. Clark, B.D. Clinton, and B.L. Haines.  2000.  A long-term study of tree seedling recruitment in southern Appalachian forests: the effects of canopy gaps and shrub understories. Canadian Journal of Forest Research 30: 1617-1631.

60.  Camill, P. and J.S. Clark. 2000.  Complex long-term climate responses of North American boreal forest and savanna.  Ecosystems3:534-544.

61.  Wyckoff, P.H. and J.S. Clark. 2000. Predicting tree mortality from diameter growth: a comparison of maximum likelihood and Bayesian approaches. Canadian Journal of Forest Research, 30: 156-167.

62.  Knoepp, J.D., D.C. Coleman, D.A. Crossley, and J.S. Clark. 2000.  Biological indices of soil quality: an ecosystem case study of their use.  Forest Ecology and Management 138:357-368.

63.  Clark, J.S., B. Beckage, P. Camill, B. Cleveland, J. Hille Ris Lambers, J. Lichter, J. MacLachlan, J. Mohan, and P. Wyckoff. 1999. Interpreting recruitment limitation in forests.  American Journal of Botany, 86:1-16.

64.  Clark, J.S., M. Silman, R. Kern, E. Macklin, and J. Hille Ris Lambers. 1999. Seed dispersal near and far: generalized patterns across temperate and tropical forests.  Ecology80:1475-1494.

65.  Clark, J. S., C. Fastie, G. Hurtt, S. T. Jackson, C. Johnson, G. King, M. Lewis, J. Lynch, S. Pacala, I.C. Prentice, E. W. Schupp, T. Webb III, and P. Wyckoff.  1998. ReidŐs Paradox of rapid plant migration.  BioScience, 48:13-24.

66.  Clark, J. S., J. Lynch, and B. J. Stocks.  1998. Relationships between charcoal particles in air and sediments in west-central Siberia.  The Holocene 8:19-30.

67.  Clark, J. S., E. Macklin, and L. Wood.  1998. Stages and spatial scales of recruitment limitation in southern Appalachian forests.  Ecological Monographs 68:213-235.

68.  Camill, P. and J. S. Clark. 1998.  Climate change disequilibrium of boreal permafrost peatlands caused by local processes.  American Naturalist 151:207-222.

69.  Collatz, G.J., J.A. Berry, and J. S. Clark. 1998.  Effects of climate and atmospheric CO2 partial pressure on the global distribution of C4 plants: past, present, and future.  Oecologia, 114:441-454.

70.  Clark, J.S. 1998. Why trees migrate so fast: Confronting theory with dispersal biology and the paleo record.  American Naturalist, 152: 204-224.

71.  Clark, J.S. 1997.  Introduction to sediment records of biomass burning and global change.  Pages 1-9. in J.S. Clark, H. Cachier , J.G. Goldammer, and B.J. Stocks, editor. Sediment Records of Biomass Burning and Global Change. Springer Verlag, Berlin, Germany.

72.  Clark, J. S., and W. A. Patterson.  1997. Background and local charcoal in sediments: scales of fire evidence in the paleorecord.  Pages 23-48. in J.S. Clark, H. Cachier , J.G. Goldammer, and B.J. Stocks, editor. Sediment Records of Biomass Burning and Global Change. Springer Verlag, Berlin, Germany.

73.  Clark, J.S. 1997. Facing short-term extrapoloation with long-term evidence: Holocene fire in the north-eastern US forests.  Journal of Ecology, 85: 377-380.

74.  Pitelka, L. F., J. Ash, S. Berry, R.H.W. Bradshaw, L. Brubaker, J.S. Clark, M.B. Davis, J.M. Dyer, R.H. Gardner, H. Gitay, G. Hope R. Hengeveld, B. Huntley, G.A. King, S. Lavorel, R.N. Mack, G.P. Malanson, M. McGlone, I.R. Noble, I.C. Prentice, M. Rejmanek, A. Saunders, A.M. Solomon, S. Sugita, and M.T. Sykes.  1997.  Plant migration and climate change.  American Scientist, 85:464-473.

75.  Clark, J. S., and T. C. Hussey.  1996. Estimating the mass flux of charcoal from sediment records: the effect of particle size, morphology, and orientation.  The Holocene 6:129-144.

76.  Clark, J. S.  1996. Baseline biomass burning emissions of eastern North America.  Pages 750-757. in J.S. Levine, editor. Biomass Burning and Global Change. MIT Press, Cambridge, Massachusetts, USA.

77.  Clark, J. S., and P. J. H. Richard.  1996. The role of paleofire in boreal and other cool-coniferous forests.  Pages 65-89 in J.G. Goldammer and V.V. Furyaev (eds). Fire in Ecosystem of Boreal Eurasia, Kluwer, Dordrecht, The Netherlands.

78.  Clark, J. S., T. C. Hussey, and P. D. Royall.  1996. Presettlement analogs for Quaternary fire regimes in eastern North America.  Journal of Paleolimnology 16: 79-96.

79.  Clark, J. S., and P. D. Royall.  1996. Local and regional sediment charcoal evidence for fire regimes in presettlement northeastern North America.  Journal of Ecology 84, 365-382.

80.  Clark, J. S., P. D. Royall, and C. Chumbley.  1996. The role of fire during climate change in an eastern North American forest at DevilŐs Bathtub, New York.  Ecology 77, 2148-2166.

81.  Clark, J.S., B.J. Stocks, and P. J.H. Richard. 1996.  Climate implications of biomass burning since the 19th century in eastern North America.  Global Change Biology, 2:433-458.

82.  Clark, J.S. 1996. Testing disturbance theory with long-term data: alternative life history solutions to the distribution of events.  American Naturalist, 148:976-996.

83.  Contributor to IPCC: 1996. Terrestrial biotic responses to environmental change and feedbacks to climate.  Pages 445-482. in J.T. Houghton, L. G. Meira Filho, B.A. Callander, N. Harris, A. Kattenberg, and K. Maskell, editor. Climate Change 1995: The Science of Climate Change. Intergovernmental Panel on Climate Change, Cambridge University Press, Cambridge, England.

84.  FIRESCAN.  1996. Fire in ecosystems of boreal Eurasia: the Bor Forest Island Fire Experiment Fire Research Campaign Asia - North (FIRESCAN).  Pages 848-873. in J.S. Levine, editor. Biomass Burning and Global Change. MIT Press, Cambridge, Massachusetts, USA.

85.  Weiss, K. F., J. G. Goldammer, J. S. Clark, D. A. Livingstone, and M. O. Andreae.  1996. Reconstruction of prehistoric fire regimes in East Africa by lake sediment analysis.   J.S. Levine, editor. Biomass Burning and Global Change. MIT Press, Cambridge, Massachusetts, USA.

86.  Clark, J. S., and Y. Ji.  1995. Fecundity and dispersal in plant populations: implications for structure and diversity.  The American Naturalist, 146:72-111.

87.  Clark, J. S., and P. D. Royall.  1995. Transformation of a northern hardwood forest by aboriginal (Iroquois) fire: charcoal evidence from Crawford Lake, Ontario, Canada.  The Holocene 5:1-9.

88.  Clark, J. S.  1995. Climate and Indian effects on southern Ontario forests: forum.  The Holocene, 5:371-379.

89.  Clark, J. S., and P. D. Royall.  1995. Particle-size evidence for source areas of charcoal accumulation in Late Holocene sediments of eastern North American lakes.  Quaternary Research 43:80-89.

90.  Wright, H. E., and J. S. Clark.  1995. Charcoal analysis of varved lake sediments.  In S. Hicks, U. Miller , and M. Saarnito (eds). Laminated Sediments and Archaeology, Journal of the European Study Group on Physical, Chemical, Mathematical and Biological Techniques Applied to Archaeology., Rixensart, Belgium 41, 125-130.

91.  FIRESCAN 1994. Fire in boreal ecosystems of Eurasia: first results of the Bor Forest Island Fire Experiment, Fire Research Campaign Asia-North (FIRESCAN).  Journal of World Resources Review, 6:499-519.

92.  Clark, J. S., and P. D. Royall.  1994. Pre-industrial particulate emissions and carbon sequestration from biomass burning in North America.  Biogeochemistry 23:1-17.

93.  Clark, J.S. 1993.  Sensitivity of forest communities to global climate change.  Pages 315-332in P. Kareiva, J.G. Kingsolver, and R.B. Huey  Biotic Interactions and Global Change, Sinauer, Sunderland, MA.

94.  Clark, J.S.  1993.  Functional groups and ecological consistencies: population perspectives on regional forest dynamics.  Pages 255-286 in J. Ehleringer and C. Field (eds) Scaling Processes between Leaf and Landscape Levels, Academic Press. New York, NY.

95.  Clark, J.S. and J. Robinson. 1993.  Paleoecology of Fire.  Pages 193-214 in P. Crutzen and J. Goldammer (editors).  Fire in the Environment: its Ecological, Climatic, and Atmospheric Chemical Importance.  Dahlem Conference, Wiley.

96.  Clark, J.S. 1993.  Fire, climate, and forest processes during the last 2000 yr.  Pages 295-308in W.E. Dean and J.P. Bradbury (eds.) Ecology and Paleoecology of Elk Lake.  Geological Society of America.

97.  Clark, J.S. 1993.  Shifting mosaic population dynamics.  Pages Pages 224-246 In  S. Levin, T.M. Powell, and J.H. Steele (eds)  Patch Dynamics, Springer Verlag, New York, New York.

98.  Binkley, D., P. Becker-Heidman, J.S. Clark, P.J. Crutzen, P. Frost, A.M. Gill, A. Granstršm, F. Mack, J.–C. Menaut, R.W. Wein, and B. van Wilgren.  1993.  Impacts of fires on ecosystems.   Pages 359-374 in P. Crutzen and J. Goldammer (editors).  Fire in the Environment: its Ecological, Climatic, and Atmospheric Chemical importance.  Dahlem Conference, Wiley.

99.  Clark, J.S. 1993.  Scale relationships in boreal forest.  Trends in Ecology and Evolution 8: 220.

100.          Clark, J. S. and Reid, C. D. 1993. Sensitivity of unmanaged ecosystems to global change.  Pages 53-89 in Darmstader, J.; Toman, M. A., editors. Non-linear Responses to Global Change, Resources for the Future, Washington,D.C.

101.          Clark J.S. 1992.  Disturbance, climate change, and forest rehabilitation.  Pages 165-186 in M. Wali (ed.)  Ecosystem Rehabilitation: Preamble to Sustained Development.  SPB Academic Publishing, The Hague, Netherlands.

102.          Clark, J.S. 1992.  Implications of individual plant growth for landscape patterns of age structure, net primary production, and resource availabilities.  Pages 421-454 in D. DeAngelis and L. Gross (eds) Populations, Communities, and Ecosystems: an Individual Perspective, Chapman and Hall, New York, NY.

103.          Clark, J.S. 1992. Validating model predictions of climate and vegetation change.  Pages 423-440 in D. Ojima (ed) Earth System Modeling, OIES Global Change Institute, Boulder, CO.

104.          Clark, J.S.  1992. Density-independent mortality, density compensation, and gap formation in plant populations.  Theoretical Population Biology 42:172-198. 

105.          Morris, L.A., P.B. Bush, and J.S. Clark.  1992.  Ecological impacts and risks associated with forest management.  Pages 153-214 in J. Cairns, B.R. Niederlehner, and D.R. Orvos (eds).  Predicting Ecosystem Risk.  Princeton Scientific Publishing Co, Princeton, NJ.

106.          Clark, J.S. 1991.  Ecosystem sensitivity to climate change and complex responses.  Pages 65-98  in R. Wyman (ed.)  Global Change and Life on Earth.  Chapman and Hall, New York, New York.

107.          Clark, J.S. 1991.  Forest-tree growth rates and probability of gap origin–a comment.  Ecology 72:1166-1169.

108.          Clark, J.S. 1991. Disturbance and tree life history on the shifting mosaic landscape.  Ecology 72:1102-1118.

109.          Clark, J.S. 1991.  Disturbance and population structure on the shifting mosaic landscape.  Ecology 72:1119-1137.

110.          Clark, J.S. 1990.  Fire and climate change during the last 750 years in northwestern Minnesota.  Ecological Monographs 60:135-159.

111.          Clark, J.S. 1990. Integration of ecological levels: individual plant growth, population mortality, and ecosystem dynamics.  Journal of Ecology 78:275-299.

112.          Clark, J.S. 1990.  Effects of 20th century climate change and fire suppression on forest production and decomposition in northwestern Minnesota.  Canadian Journal of Forest Research 20:219-232.

113.          Clark, J.S. 1990.  Population and evolutionary consequences of being a coastal plant: long-term evidence from the North Atlantic coasts.  Aquatic Science Reviews 2:509-533.

114.          Clark, J.S. 1990.  Landscape interactions among nitrogen mineralization, species composition, and long-term disturbance. Biogeochemisty 11:1-22.

115.          Clark, J.S.  1989.  Water balance and fire occurrence during the last 160 years in northwestern Minnesota.  Journal of Ecology 77:989-1004. 

116.          Clark, J.S. 1989.  Forests are for burning.  Natural History 1:50-53.

117.          Clark, J.S., Merkt, J., and Mźller, H. 1989.  Post Glacial fire, vegetation, and cultural history of the northern Alpine forelands, southwest Germany.  Journal of Ecology 77:897-925.

118.          Clark, J.S. 1989. Ecological disturbance as a renewal process: theory and application to fire history. Oikos 56:17-30.

119.          Clark, J.S. 1988.  Effects of climate change on fire regime in northwestern Minnesota.  Nature 334:233-235.

120.          Clark, J.S. 1988.  Stratigraphic charcoal analysis on petrographic thin sections: recent fire history in northwestern Minnesota. Quaternary Research 30:81-91.

121.          Clark, J.S. 1988.  Particle motion and the theory of charcoal analysis: source area, transport, deposition, and sampling.  Quaternary Research 30:67-80.

122.          Clark, J.S. and Patterson, W.A. 1987. Dating of the organic deposits. in  S.P. Leatherman, (ed.)  ŇGeomorphic Development of Long IslandŐs South Shore BarriersÓ, National Park Service Technical Report, Boston, Massachusetts.

123.          Clark, J.S. 1986.  Dynamism in the barrier-beach vegetation of Great South Beach, New York.  Ecological Monographs 56:97-126.

124.          Clark, J.S.  1986.  Late Holocene vegetation and coastal processes at a Long Island tidal marsh.  Journal of Ecology 74:561-578.

125.          Clark, J.S. 1986.  Coastal forest tree populations in a changing environment, southeastern Long Island, New York.  Ecological Monographs 56:259-277.

126.          Clark, J.S., Overpeck, J., Webb, T., and Patterson, W.A. 1986. Pollen stratigraphic correlation and dating of barrier-beach peat sections.  Review of Palaeobotany and Palynology 47, 145-168.

127.          Clark, J.S. 1986.  Vegetation and land-use history of the William Floyd Estate, Fire Island National Seashore, New York.  National Park Service, Office of Scientific Studies Technical Report OSS 86-3, Boston, Massachusetts.

128.          Clark, J.S. and Patterson, W.A. 1985.  The development of a tidal marsh: upland and oceanic influences.  Ecological Monographs 55, 189-217.

129.          Clark, J.S. 1984.  Chronologies for recent sediments in coastal environments.  Proceedings of the 12th Nordic Symposium on Sediments, Skallingen, Denmark 12:76-81.

130.          Clark, J.S. and Patterson, W.A. 1984.  Pollen, 210Pb, and opaque spherules: an integrated approach to dating and sedimentation in the intertidal environment.  Journal of Sedimentary Petrology 54:1249-1263.